Searching for bacterial pathogens in the Digital Ocean—Executive Summary
      
      
        @article{Sugiyama2017CIESM1,
        Author = {Giuliano, L. and Dorman, C. and Bowler, C. and Sugiyama, M. and Vezzulli, L. and Czerucka, D. and Le Roux, F. and D'Auria, G. and Troussellier, M. and Briand, F.},
        Title = {Searching for bacterial pathogens in the Digital Ocean---Executive Summary},
        Journal = {CIESM Workshop Monograph},
        Volume = {49},
        Pages = {5--25},
        Year = {2017}}
      
     
    
      
        Finding Statistically Significant Patterns from Data
      
      
        @article{Sugiyama2017CIESM2,
        Author = {Sugiyama, M.},
        Title = {Finding Statistically Significant Patterns from Data},
	Journal = {CIESM Workshop Monograph},
        Volume = {49},
        Pages = {53--58},
        Year = {2017}}
      
     
    
      
        Pattern Mining with Statistical Significance (in Japanese)
      
      
        @article{Sugiyama2017OS,
        Author = {Sugiyama, M.},
        Title = {Pattern Mining with Statistical Significance (in Japanese)},
        Journal = {Communications of the Operations Research Society of Japan},
        Volume = {62},
        Number = {4},
        Pages = {226--232},
        Year = {2017}}
      
     
    
    
      
        graphkernels: R and Python Packages for Graph Comparison
      
      
        @article{Sugiyama2018Bioinfo,
        Author = {Sugiyama, M. and Ghisu, E. and Llinares-L{\'o}pez, F. and Borgwardt, K. M.},
        Title = {graphkernels: R and Python Packages for Graph Comparison},
        Journal = {Bioinformatics},
        Volume = {34},
        Number = {3},
        Pages = {530--532},
        Year = {2018}}
      
     
    
      
        Genome-Wide Detection of Intervals of Genetic Heterogeneity Associated with Complex Traits
      
      
        @article{Llinares2015ISMB,
        Author = {Llinares-L{\'o}pez, F. and Grimm, D. G. and Bodenham, D. A. and Gieraths, U. and Sugiyama, M. and Rowan, B. and Borgwardt, K. M.},
        Title = {Genome-Wide Detection of Intervals of Genetic Heterogeneity Associated with Complex Traits},
        Journal = {Bioinformatics},
	Volume = {31},
        Number = {12},
        Pages = {i240--i249},
        Year = {2015}}
      
     
    
      
        Efficient Network-Guided Multi-Locus Association Mapping with Graph Cut
      
      
        @article{Azencott2013ISMB,
        Author = {Azencott, C.-A. and Grimm, D. G. and Sugiyama, M. and Kawahara, Y. and Borgwardt, K. M.},
        Title = {Efficient Network-Guided Multi-Locus Association Mapping with Graph Cut},
        Journal = {Bioinformatics},
        Volume = {29},
        Number = {13},
        Pages = {i171--i179},
        Year = {2013}}
      
     
    
      
        Semi-Supervised Learning on Closed Set Lattices
      
      
        @article{SugiyamaIDA01,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {Semi-Supervised Learning on Closed Set Lattices},
        Journal = {Intelligent Data Analysis},
        Volume = {17},
        Number = {3},
        Pages = {399--421},
        Publisher = {IOS Press},
        Year = {2013}}
      
     
    
      
        Learning Figures with the Hausdorff Metric by FractalsTowards Computable Binary Classification
      
      
        @article{SugiyamaMLJ01,
        Author = {Sugiyama, M. and Hirowatari, E. and Tsuiki, H. and Yamamoto, A.},
        Title = {Learning Figures with the Hausdorff Metric by Fractals---Towards Computable Binary Classification},
        Journal = {Machine Learning},
        Volume = {90},
        Number = {1},
        Pages = {91--126},
        Publisher = {Springer},
        Year = {2013}}
      
     
    
      
        Privacy Preserving Using Dummy Data for Set Operations in Itemset Mining Implemented with ZDDs
      
      
        @article{OtakiIEICE01,
        Author = {Otaki, K. and Sugiyama, M. and Yamamoto, A.},
        Title = {Privacy Preserving Using Dummy Data for Set Operations in Itemset Mining Implemented with {ZDD}s},
        Journal = {IEICE Transactions on Information and Systems},
        Volume = {E95-D},
        Number = {12},
        Pages = {3017--3025},
        Publisher = {IEICE},
        Year = {2012}}
      
     
    
      
        Semi-Supervised Ligand Finding Using Formal Concept Analysis
      
      
        @article{SugiyamaTOM01,
        Author = {Sugiyama, M. and Imajo, K. and Otaki, K. and Yamamoto, A.},
        Title = {Semi-Supervised Ligand Finding Using Formal Concept Analysis},
        Journal = {IPSJ Transactions on Mathematical Modeling and Its Applications (TOM)},
        Volume = {5},
        Number = {2},
        Pages = {39--48},
        Publisher = {The Information Processing Society of Japan (IPSJ)},
        Year = {2012}}
      
     
    
    
      
	Finding Statistically Significant Interactions between Continuous Features
      
      
	@inproceedings{Sugiyama2019Finding,
	Author = {Sugiyama, M. and Borgwardt, K},
	Title = {Finding Statistically Significant Interactions between Continuous Features},
	Booktitle = {Proceedings of the 28th International Joint Conference on Artificial Intelligence (IJCAI 2019)},
	Pages = {3490--3498},
	Address = {Macao, China},
	Month = {August},
	Year = {2019}}
      
     
    
      
	Bias-Variance Trade-Off in Hierarchical Probabilistic Models Using Higher-Order Feature Interactions
      
      
        @inproceedings{Luo2019AAAI,
        Author = {Luo, S., Sugiyama, M.},
        Title = {Bias-Variance Trade-Off in Hierarchical Probabilistic Models Using Higher-Order Feature Interactions},
        Booktitle = {Proceedings of the 33rd AAAI Conference on Artificial Intelligence (AAAI-19)},
	Volume = {33},
        Number = {01},
	Pages = {4488--4495},
        Address = {Hawaii, USA},
        Month = {January--February},
        Year = {2019}}
      
     
    
      
        Legendre Decomposition for Tensors
      
      
        @inproceedings{Sugiyama2018NeurIPS,
        Author = {Sugiyama, M. and Nakahara, H. and Tsuda, K.},
        Title = {Legendre Decomposition for Tensors},
        Booktitle = {Advances in Neural Information Processing Systems 31},
	Pages = {8825--8835},
        Address = {Montréal, Canada},
        Month = {December},
        Year = {2018}}
      
     
    
      
        Tensor Balancing on Statistical Manifold
      
      
        @inproceedings{Sugiyama2017ICML,
        Author = {Sugiyama, M. and Nakahara, H. and Tsuda, K.},
        Title = {Tensor Balancing on Statistical Manifold},
        Booktitle = {Proceedings of the 34th International Conference on Machine Learning (ICML)},
	Volume = {70},
	Pages = {3270--3279},
	Series = {Proceedings of Machine Learning Research},
        Address = {Sydney, Australia},
        Month = {August},
        Year = {2017}}
      
     
    
      
        Information Decomposition on Structured Space
      
      
        @inproceedings{Sugiyama2016ISIT,
        Author = {Sugiyama, M. and Nakahara, H. and Tsuda, K.},
        Title = {Information Decomposition on Structured Space},
        Booktitle = {2016 IEEE International Symposium on Information Theory (ISIT)},
	Pages = {575--579},
        Address = {Barcelona, Spain},
        Month = {July},
        Year = {2016}}
      
     
    
      
        Halting in Random Walk Kernels
      
      
        @inproceedings{Sugiyama2015NIPS,
        Author = {Sugiyama, M. and Borgwardt, K. M.},
        Title = {Halting in Random Walk Kernels},
        Booktitle = {Advances in Neural Information Processing Systems 28},
	Pages = {1630--1638},
        Address = {Montréal, Canada},
        Month = {December},
        Year = {2015}}
      
     
    
      
        Fast and Memory-Efficient Significant Pattern Mining via Permutation Testing
      
      
        @inproceedings{Llinares2015KDD,
        Author = {Llinares-L{\'o}pez, F. and Sugiyama, M. and Papaxanthos, L. and Borgwardt, K. M.},
        Title = {Fast and Memory-Efficient Significant Pattern Mining via Permutation Testing},
        Booktitle = {Proceedings of the 21st ACM SIGKDD Conference on Knowledge Discovery and Data Mining},
	Pages = {725--734},
        Address = {Sydney, Australia},
        Month = {August},
        Year = {2015}}
      
     
    
      
        Significant Subgraph Mining with Multiple Testing Correction
      
      
        @inproceedings{Sugiyama2015SDM,
	Author = {Sugiyama, M. and Llinares-L{\'o}pez, F. and Kasenburg, N. and Borgwardt, K. M.},
        Title = {Significant Subgraph Mining with Multiple Testing Correction},
        Booktitle = {Proceedings of the 2015 SIAM International Conference on Data Mining},
	Pages = {37--45},
        Address = {Vancouver, British Columbia, Canada},
        Month = {April--May},
        Year = {2015}}
      
     
    
      
        Multi-Task Feature Selection on Multiple Networks via Maximum Flows
      
      
        @inproceedings{Sugiyama2014SDM,
        Author = {Sugiyama, M. and Azencott, C.-A. and Grimm, D. G. and Kawahara, Y. and Borgwardt, K. M.},
        Title = {Multi-Task Feature Selection on Multiple Networks via Maximum Flows},
        Booktitle = {Proceedings of the 2014 SIAM International Conference on Data Mining},
	Pages = {199--207},
        Address = {Philadelphia, Pennsylvania, USA},
        Month = {April},
        Year = {2014}}
      
     
    
      
        Rapid Distance-Based Outlier Detection via Sampling
      
      
        @inproceedings{Sugiyama2013NIPS,
        Author = {Sugiyama, M. and Borgwardt, K. M.},
        Title = {Rapid Distance-Based Outlier Detection via Sampling},
        Booktitle = {Advances in Neural Information Processing Systems 26},
	Pages = {467--475},
        Address = {Lake Tahoe, Nevada, USA},
        Month = {December},
        Year = {2013}}
      
     
    
      
        Measuring Statistical Dependence via the Mutual Information Dimension
      
      
        @inproceedings{Sugiyama2013IJCAI,
        Author = {Sugiyama, M. and Borgwardt, K. M.},
        Title = {Measuring Statistical Dependence via the Mutual Information Dimension},
        Booktitle = {Proceedings of the 23rd International Joint Conference on Artificial Intelligence (IJCAI 2013)},
        Pages = {1692--1698},
        Address = {Beijing, China},
        Month = {August},
        Year = {2013}}
      
     
    
      
        A Fast and Flexible Clustering Algorithm Using Binary Discretization
      
      
        @inproceedings{Sugiyama2011ICDM,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {A Fast and Flexible Clustering Algorithm Using Binary Discretization},
        Booktitle = {Proceedings of the 2011 IEEE International Conference on Data Mining (ICDM 2011)},
        Pages = {1212--1217},
        Address = {Vancouver, Canada},
        Month = {December},
        Year = {2011}}
      
     
    
      
        The Minimum Code Length for Clustering Using the Gray Code
      
      
        @inproceedings{Sugiyama2011ECML,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {The Minimum Code Length for Clustering Using the {G}ray Code},
        Editor = {Gunopulos, D. and Hofmann, T. and Malerba, D. and Vazirgiannis, M.},
        Booktitle = {Machine Learning and Knowledge Discovery in Databases},
        Series = {Lecture Notes in Computer Science},
        Volume = {6913},
        Pages = {365--380},
        Publisher = {Springer},
        Year = {2011}}
      
     
    
      
        Semi-Supervised Learning for Mixed-Type Data via Formal Concept Analysis
      
      
        @inproceedings{Sugiyama2011ICCS,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {Semi-Supervised Learning for Mixed-Type Data via Formal Concept Analysis},
        Editor = {Andrews, S. and Polovina, S. and Hill, R. and Akhgar, B.},
        Booktitle = {Conceptual Structures for Discovering Knowledge},
        Series = {Lecture Notes in Computer Science},
        Volume = {6828},
        Pages = {284--297},
        Publisher = {Springer},
        Year = {2011}}
      
     
    
      
        The Coding Divergence for Measuring the Complexity of Separating Two Sets
      
      
        @inproceedings{Sugiyama2010ACML,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {The Coding Divergence for Measuring the Complexity of Separating Two Sets},
        Editor = {Sugiyama, M. and Yang, Q.},
        Booktitle = {Proceedings of 2nd Asian Conference on Machine Learning (ACML2010)},
        Series = {JMLR Workshop and Conference Proceedings},
        Volume = {13},
        Pages = {127--143},
        Address = {Tokyo, Japan},
        Month = {November},
        Year = {2010}}
      
     
    
      
        Learning Figures with the Hausdorff Metric by Fractals
      
      
        @inproceedings{Sugiyama2010ALT,
        Author = {Sugiyama, M. and Hirowatari, E. and Tsuiki, H. and Yamamoto, A.},
        Title = {Learning Figures with the {H}ausdorff Metric by Fractals},
        Editor = {Hutter, M. and Stephan, F. and Vovk, V. and Zeugmann, T.},
        Booktitle = {Algorithmic Learning Theory},
        Series = {Lecture Notes in Computer Science},
        Volume = {6331},
        Pages = {315--329},
        Publisher = {Springer},
        Year = {2010}}
      
     
    
    
      
        Learning Graph Representation via Formal Concept Analysis
      
      
        @inproceedings{Yoneda2018R2L,
        Author = {Yoneda, Y. and Sugiyama, M. and Washio, T.},
        Title = {Learning Graph Representation via Formal Concept Analysis},
        Booktitle = {Proceedings of Relational Representation Learning},
        Address = {Montréal, Canada},
        Month = {December},
        Year = {2018}}
      
     
    
      
        Finding Combinations of Binary Variables with Guaranteed Accuracy
      
      
        @inproceedings{Baba2016ADAPTIVE,
        Author = {Baba, Y. and Sugiyama, M. and Washio, T.},
        Title = {Finding Combinations of Binary Variables with Guaranteed Accuracy},
        Booktitle = {Proceedings of Adaptive and Scalable Nonparametric Methods in Machine Learning},
        Address = {Barcelona, Spain},
        Month = {December},
        Year = {2016}}
      
     
    
      
        Fast and Memory-Efficient Significant Pattern Mining via Permutation Testing
      
      
        @inproceedings{Llinares2015BIOKDD,
        Author = {Llinares-L{\'o}pez, F. and Sugiyama, M. and Papaxanthos, L. and Borgwardt, K. M.},
        Title = {Fast and Memory-Efficient Significant Pattern Mining via Permutation Testing},
        Booktitle = {Proceedings of 14th International Workshop on Data Mining in Bioinformatics (BIOKDD'15)},
        Address = {Sydney, Australia},
        Month = {August},
        Year = {2015}}
      
     
    
      
        Detecting Anomalous Subgraphs on Attributed Graphs via Parametric Flow
      
      
        @inproceedings{Sugiyama2014GABA,
        Author = {Sugiyama, M. and Otaki, K.},
        Title = {Detecting Anomalous Subgraphs on Attributed Graphs via Parametric Flow},
	Editor = {Murata, T. and Mineshima, K. and Bekki, D.},
	Booktitle = {New Frontiers in Artificial Intelligence},
        Series = {Lecture Notes in Computer Science},
        Volume = {9067},
        Pages = {340--355},
        Publisher = {Springer},
        Address = {Yokohama, Japan},
        Year = {2015}}
      
     
    
      
        Rapid Distance-Based Outlier Detection via Sampling
      
      
        @inproceedings{Sugiyama2013RMML,
        Author = {Sugiyama, M. and Borgwardt, K. M.},
        Title = {Rapid Distance-Based Outlier Detection via Sampling},
        Booktitle = {NIPS 2013 Randomized Methods for Machine Learning Workshop (RMML 2013)},
        Address = {Lake Tahoe, Nevada, USA},
        Month = {December},
        Year = {2013}}
      
     
    
      
        Outliers on Concept Lattices
      
      
        @inproceedings{Sugiyama2013DDS,
        Author = {Sugiyama, M.},
        Title = {Outliers on Concept Lattices},
	Editor = {Nakano, Y. and Satoh, K. and Bekki, D.},
	Booktitle = {New Frontiers in Artificial Intelligence},
        Series = {Lecture Notes in Computer Science},
        Volume = {8417},
        Pages = {352--368},
        Publisher = {Springer},
        Address = {Yokohama, Japan},
        Year = {2014}}
      
     
    
      
        High-throughput Data Stream Classification on Trees
      
      
        @inproceedings{Sugiyama2011ALSIP,
        Author = {Sugiyama, M. and Yoshioka, T. and Yamamoto, A.},
        Title = {High-throughput Data Stream Classification on Trees},
        Booktitle = {Proceedings of Second Workshop on Algorithms for Large-Scale Information Processing in Knowledge Discovery (ALSIP 2011)},
        Address = {Kagawa, Japan},
        Month = {December},
        Year = {2011}}
      
     
    
      
        Fast Clustering Based on the Gray-Code
      
      
        @inproceedings{Sugiyama2011LLLL,
        Author = {Sugiyama, M. and Yamamoto, A.},
        Title = {Fast Clustering Based on the {G}ray-Code},
        Booktitle = {Proceedings of 7th Workshop on Learning with Logics and Logics for Learning (LLLL2011)},
        Pages = {42},
        Address = {Osaka, Japan},
        Month = {March},
        Year = {2011}}
      
     
    
      
        Learning Figures with the Hausdorff Metric by Self-similar Sets
      
      
        @inproceedings{Sugiyama2009LLLL,
        Author = {Sugiyama, M. and Hirowatari, E. and Tsuiki, H. and Yamamoto, A.},
        Title = {Learning Figures with the {H}ausdorff Metric by Self-similar Sets},
        Booktitle = {Proceedings of 6th Workshop on Learning with Logics and Logics for Learning (LLLL2009)},
        Pages = {27--34},
        Address = {Kyoto, Japan},
        Month = {July},
        Year = {2009}}
      
     
    
      
        Learning from Real-Valued Data with the Model Inference Mechanism through the Gray-Code Embedding
      
      
        @inproceedings{Sugiyama2006LLLL,
        Author = {Sugiyama, M. and Hirowatari, E. and Tsuiki, H. and Yamamoto, A.},
        Title = {Learning from Real-Valued Data with the Model Inference Mechanism through the {G}ray-Code Embedding},
        Booktitle = {Proceedings of 4th Workshop on Learning with Logics and Logics for Learning (LLLL2006)},
        Pages = {31--37},
        Address = {Tokyo, Japan},
        Month = {June},
        Year = {2006}}